INPUT:
******

>s1
ACATGCTACACGTATCCGATACCCCGTAACCGATAACGATACACAGACCTCGTACGCTTG
CTACAACGTACTCTATAACCGAGAACGATTGACATGCCTCGTACACATGCTACACGTACT
CCGAT

>s2
ACATGCGACACTACTCCGATACCCCGTAACCGATAACGATACAGAGACCTCGTACGCTTG
CTAATAACCGAGAACGATTGACATTCCTCGTACAGCTACACGTACT
CCGAT

OUTPUT:
********

Scores:    match = 1, mismatch = -2, h =-5, g = -2

Sequence 1 = "s1", length = 125 characters
Sequence 2 = "s2", length = 111 characters

s1  1    ACATGCTACACGTATCCGATACCCCGTAACCGATAACGATACACAGACCTCGTACGCTTG  60
         |||||| ||||   ||||||||||||||||||||||||||||| ||||||||||||||||
s2  1    ACATGCGACACTACTCCGATACCCCGTAACCGATAACGATACAGAGACCTCGTACGCTTG  60

s1  61   CTACAACGTACTCTATAACCGAGAACGATTGACATGCCTCGTACACATGCTACACGTACT  120
         |||           ||||||||||||||||||||| |||||||||   ||||||||||||
s2  61   CTA-----------ATAACCGAGAACGATTGACATTCCTCGTACA---GCTACACGTACT  106

s1  121  CCGAT  125
         |||||
s2  107  CCGAT  111



Report: 

Global optimal score = 55

Number of:  matches = 105, mismatches = 6, gaps = 14, opening gaps = 2

 Identities = 105/125 (84%), Gaps = 14/125 (11%)